Astrophysical and Cosmological Relativity Group

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====== Required modules ======

The following modules are installed on Minerva.  **Please add your username next to those that you require.**  This allows old modules to be removed.

If there's only one (compiler and) version, a **module load //software//** will select it without going into detail.
Note that there are a few versions flagged as "(default)" in **module av** output that are not "highest" (e.g. python/2.7.12). This has to be adjusted!
**/intel-2016/** and **/gcc/** entries are not shown.

===table as of 2018-01-31===
^ module (software[/compiler]/version)  ^^^ users  ^
| blas               | 3.6.0  ||
| //Note: boost needs cleaning up. Upgrade to 1.66.0?//  |||
| boost              | 1.61.0  ||
| boost              | icc16  | 1.61.0  |
| boost              | impi  | icc16/1.61.0  |
| boost              | openmpi  | 1.61.0  |
| boost              | openmpi  | icc16/1.61.0  |
| boost              | gcc-4.9.3     | 1.66.0   |
| cairo              | gcc-4.9.3     | 1.12.18  | //splash/gcc-4.9.3/2.6.0//  |
| cairo              | gcc-4.9.3     | 1.14.12  | //splash/gcc-4.9.3/2.7.0//  |
| cmake              | 3.6.0  ||
| cython             | gcc-4.9.3     | 0.27.3  | //(*)//  |
|  //Note: fftw3 needs cleaning up. Drop 3.3.5?//  |||
| fftw3              | 3.3.5  ||
| fftw3              | gcc-4.9.3     | 3.3.6-pl1  |
| fftw3              | gcc-4.9.3     | 3.3.7  |
| fftw3              | openmpi  | 3.3.5  |
| gcc                | 4.9.3                   || //(*)//  |
| gdb                | 7.11                    ||
| git                | 2.9.3                   ||
| git-annex          | 5.20140421              ||
| //Note: might be moved one level down, to git-annex/5.20140421//  |||
| git-annex          | gcc-4.9.3  | 5.20140421  |
| git-lfs            | 2.2.1                   ||
| gsl                | gcc-4.9.3     | 1.5      |
| gsl                | gcc-4.9.3     | 1.16     |
| gsl                | gcc-4.9.3     | 2.1      | //hdf5/gcc-4.9.3/1.8.16//  |
| gsl                | gcc-4.9.3     | 2.4      |
| h5py               | gcc-4.9.3     | 2.7.1    |
| hdf5               | gcc-4.9.3     | 1.8.16   |
| hdf5               | gcc-4.9.3     | 1.8.18   | //splash/gcc-4.9.3/2.6.0//  |
| hdf5               | gcc-4.9.3     | 1.8.19   | //petsc/gcc-4.9.3/3.8.3//  |
| hdf5               | gcc-4.9.3     | 1.10.1   | //splash/gcc-4.9.3/2.7.0 et al//  |
| hdf5               | intel-2017.4  | 1.8.16   |
| hdf5               | intel-2017.4  | 1.8.19   | //petsc/intel-2017.4/3.8.3//  |
| hdf5               | intel-2017.4  | 1.10.1   | //breaks petsc?//  |
| hwloc              | gcc-4.9.3     | 1.11.2   |
| hwloc              | gcc-4.9.3     | 1.11.9   |
| //get rid of all intel/*/2016.1?//  |||
| intel/advisor      | 2016.1/64/2016  ||
| intel/advisor      | 2017.4/64/2017.4        ||
| intel/compiler     | 2016.1/64/2016  ||
| intel/compiler     | 2017.4/64/2017.4        || //(*)//  |
| intel/daal         | 2016.1/64/2016  ||
| intel/daal         | 2017.4/64/2017.4        ||
| intel/impi         | 2016.1/64/5.1.2  ||
| intel/impi         | 2017.4/64/2017.4 ||
| intel/impi         | 2017.4.239/64/2017.4.239  ||
| intel/impi         | 2018.0/64/2018.0.128    ||
| intel/impi         | 2018.0.128/64/2018.0.128  ||
| intel/inspector    | 2016.1/64/2016  ||
| intel/inspector    | 2017.4/64/2017.4        ||
| intel/ipp          | 2016.1/64/2016  ||
| intel/ipp          | 2017.4/64/2017.4        ||
| intel/itac         | 2016.1/64/9.1.2.024  ||
| intel/itac         | 2017.4/64/2017.3.030    ||
| intel/mkl          | 2016.1/64/11.3  ||
| intel/mkl          | 2017.4/64/2017.4        || //(*)//  |
| //intel/mpi is a symbolic link to intel/impi//  |||
| intel/mpi          | 2016.1/64/5.1.2  ||
| intel/mpi          | 2017.4/64/2017.4  ||
| intel/mpi          | 2017.4.239/64/2017.4.239  ||
| intel/mpi          | 2018.0/64/2018.0.128    ||
| intel/mpi          | 2018.0.128/64/2018.0.128  || //(*)//  |
| intel/tbb          | 2016.1/64/2016  ||
| intel/tbb          | 2017.4/64/2017.4        ||
| intel/vtune        | 2016.1/64/2016  ||
| intel/vtune        | 2017.4/64/2017.4        ||
| jwm                | gcc-4.9.3     | 2.3.6    |
| //Drop old lapack?//  |||
| lapack             | 3.6.1                   ||
| lapack             | gcc-4.9.3     | 3.8.0    | //petsc/gcc-4.9.3/3.8.3//  |
| libpng             | gcc-4.9.3     | 1.6.28   | //splash/gcc-4.9.3/2.6.0//  |
| libpng             | gcc-4.9.3     | 1.6.34   | //splash/gcc-4.9.3/2.7.0//  |
| matplotlib         | py27  | 1.5.3  |
| numpy              | py27  | 1.11.2  | //scipy/py27/0.18.1//  |
| numpy              | gcc-4.9.3     | 1.14.0   | //scipy/gcc-4.9.3/1.0.0//  |
| openblas           | 0.2.18  || //scipy/py27/0.18.1//  |
| openblas           | gcc-4.9.3     | //numpy/gcc-4.9.3/1.14.0, scipy/gcc-4.9.3/1.0.0//  |
| openmpi            | gcc-4.9.3     | 1.10.2   | //visit/gcc-4.9.3/*, petsc/gcc-4.9.3/3.8.3//  |
| openmpi            | gcc-4.9.3     | 3.0.0    | 
| openmpi            | intel-2016.1  | 1.10.2   | //get rid of 2016.1?//  |
| openmpi            | intel-2017.4  | 3.0.0    | //use Intel MPI instead? //  |
| petsc              | gcc-4.9.3     | 3.8.3    |
| petsc              | intel-2017.4  | 3.8.2    |
| petsc              | intel-2017.4  | 3.8.3    |
| pixman             | gcc-4.9.3     | 0.32.6   | //splash/gcc-4.9.3/2.6.0//  |
| pixman             | gcc-4.9.3     | 0.34.0   | //splash/gcc-4.9.3/2.7.0//  |
| python             | 2.7.12  || //h5py/gcc-4.9.3/2.7.1//  |
| python             | gcc-4.9.3     | 2.7.14   |
| python3            | gcc-4.9.3     | 3.5.1    |
| python3            | gcc-4.9.3     | 3.5.4    |
| python-setuptools  | gcc-4.9.3     | 38.2.4   | //(*)//  |
| scalapack          | openmpi  | 2.0.2  |
| scipy              | py27  | 0.18.1  |
| scipy              | gcc-4.9.3     | 1.0.0    | //boost/gcc-4.9.3/1.66.0//  |
| splash             | gcc-4.9.3     | 2.6.0    |
| splash             | gcc-4.9.3     | 2.7.0    |
| valgrind           | 3.11.0                  ||
| visit              | gcc-4.9.3     | 2.11.0   |
| visit              | gcc-4.9.3     | 2.11.0-new  |
| visit              | gcc-4.9.3     | 2.12.3   |
| vnc4               | gcc-4.9.3     | 4.1.1+X4.3.0  | //(*)//  |
| wolfram/mathematica  | 10.4.1                ||
| wolfram/mathematica  | 11.1.1                ||
| //Missing://  |||
| sudo               | any           | any      | johndoe  |

++++old table|
** All occurrences of /gcc/ are equivalent to /gcc-4.9.3/. We may want to get rid of the /gcc/ lines. **
** intel-2016 is a symlink to intel-2016.1 **

^  Module                                 ^ Users                 ^ New versions (build date)  ^
| blas/gcc/3.5.0                          |                       | 
| blas/gcc-4.9.3/3.5.0                    |                       | blas/3.6.0 (?)  |
| cairo/gcc/1.12.18                       |                       |
| cairo/gcc-4.9.3/1.12.18                 | cmaurei               | 1.14.12 (20180129)  |
| fftw3/gcc/3.3.6-pl1                     |                       |
| fftw3/gcc-4.9.3/3.3.6-pl1               | ianhin, tim           |
| gcc/4.9.3                               | ianhin, cmaurei, tim  |
| git-annex/gcc/5.20140421                | ianhin, tim           |
| git-annex/gcc-4.9.3/5.20140421          |                       |
| gsl/gcc-4.9.3/1.16                      | ianhin, tim           | 1.16 rebuilt (20180129)  |
| gsl/gcc-4.9.3/1.5                       |                       |
| gsl/gcc-4.9.3/2.1                       | cmaurei               | 2.4 (20180129)  |
| hdf5/gcc-4.9.3/1.8.16                   |                       |
| hdf5/gcc-4.9.3/1.8.18                   | ianhin, cmaurei       | 1.8.19 (201711xx), 1.10.1 (same)  |
| hdf5/intel-2016.1/1.8.16                | ianhin                | intel-2017.4/1.8.19 (201711xx), intel-2017.4/1.10.1 (same)  |
| hdf5/intel-2016.1/1.8.16-test-no-intel  |                       |
| hwloc/gcc/1.11.2                        |                       |
| hwloc/gcc-4.9.3/1.11.2                  | ianhin                | 1.11.9 (20180129)  |
| intel/advisor/2016.1/64/2016            | ianhin                |
| intel/advisor/2017.4/64/2017.4          | ianhin                |
| intel/compiler/2015.2/64/2015.1.133     |                       |
| intel/compiler/2016.1/64/2016           | ianhin, tim           |
| intel/compiler/2017.4/64/2017.4         | ianhin                |
| intel/daal/2016.1/64/2016               | ianhin, tim           |
| intel/daal/2017.4/64/2017.4             |                       |
| intel/inspector/2016.1/64/2016          | ianhin                |
| intel/inspector/2017.4/64/2017.4        | ianhin                |
| intel/ipp/2016.1/64/2016                |                       |
| intel/ipp/2017.4/64/2017.4              |                       |
| intel/itac/2016.1/64/9.1.2.024          |                       |
| intel/itac/2017.4/64/2017.3.030         |                       |
| intel/mkl/2016.1/64/11.3                | ianhin, tim           |
| intel/mkl/2017.4/64/2017.4              | ianhin                |
| intel/mpi/2016.1/64/5.1.2               | ianhin                |
| intel/mpi/2017.4/64/2017.4              | ianhin, tim           |
| intel/tbb/2016.1/64/2016                |                       |
| intel/tbb/2017.4/64/2017.4              |                       |
| intel/vtune/2016.1/64/2016              | ianhin                |
| intel/vtune/2017.4/64/2017.4            | ianhin                |
| jwm/gcc/2.3.6                           | ianhin                |
| libpng/gcc/1.6.28                       |                       |
| libpng/gcc-4.9.3/1.6.28                 | cmaurei               | 1.6.34 (20180129)  |
| libxml2/gcc/2.9.4                       |                       |
| libxml2/gcc-4.9.3/2.9.4                 |                       |
| netloc/gcc-4.9.3/0.5                    |                       | cannot rebuild?  |
| openblas/gcc/0.2.15                     |                       | openblas/0.2.18 (?)  |
| openblas/gcc-4.9.3/0.2.15               |                       |
| openmpi/gcc/1.10.2                      |                       |
| openmpi/gcc-4.9.3/1.10.2                | cmaurei, tim          |
| openmpi/intel-2016.1/1.10.2             |                       |
| petsc/gcc-4.9.3/3.5.4                   |                       |
| petsc/intel-2016.1/3.5.4                | ianhin                | intel-2017.4/3.8.2 (201711xx), intel-2017.4/3.8.3 (20180129)  |
| petsc/intel-2016.1/3.5.4-test-noimpi    |                       |
| petsc/intel-2016.3/3.5.4-test           |                       |
| petsc/intel-2016.3/3.5.4-test-noimpi    |                       |
| petsc/intel-2016/3.5.4                  |                       |
| petsc/intel-2016/3.5.4-test-noimpi      |                       |
| pip/python2.7/8.1.1                     |                       |
| pip/python2.7/9.0.1                     |                       |
| pixman/gcc-4.9.3/0.32.6                 | cmaurei               | 0.34.0 (20180129)  |
| python3/gcc/3.5.1                       | ianhin, cmaurei       |
| python3/gcc-4.9.3/3.5.1                 |                       |
| splash/gcc-4.9.3/2.6.0                  | cmaurei               |
| visit/gcc/2.11.0                        | ianhin, tim           | 2.12.3 (201711xx)  |
| vnc4/gcc/4.1.1+X4.3.0                   | ianhin, tim           |
| wolfram/mathematica/10.4.1              | ianhin                |
| wolfram/mathematica/11.1.1              | ianhin, tim           |
++++

2018-01-29: Cleanup, remove non-existing modules [sg]